Home » Publications

2012

Duodu S, Larsson P, Sjödin A, Forsman M, Colquhoun D. The distribution of Francisella-like bacteria associated with coastal waters in Norway. Microbial ecology. 2012.
Li J-W, Robison K, Martin M, Sjödin A, Usadel B, Young M, Olivares EC, Bolser DM. The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis. Nucleic acids research. 2012;40(Database issue):D1313-7.

2010

Karlberg A, Englund M, Petterle A, Molnar G, Sjödin A, Bako L, Bhalerao R. Analysis of global changes in gene expression during activity-dormancy cycle in hybrid aspen apex. 2010;27(1).
Sjödin A, Svensson K, Lindgren M, Forsman M, Larsson Pär. Whole-genome sequencing reveals distinct mutational patterns in closely related laboratory and naturally propagated Francisella tularensis strains. PloS one. 2010;5(7).
Resman L, Howe G, Jonsen D, Englund M, Druart N, Schrader J, Antti H, Skinner J, Sjödin A, Chen T, et al. Components acting downstream of short day perception regulate differential cessation of cambial activity and associated responses in early and late clones of hybrid poplar. Plant physiology. 2010;154(3).

2009

Sjödin A, Street NR, Sandberg G, Gustafsson P, Jansson S. The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome. The New phytologist. 2009;182(4).
Babst B, Sjödin A, Jansson S, Orians C. Local and systemic transcriptome responses to herbivory and jasmonic acid in Populus. Tree Genetics & Genomes. 2009;5(3).
Fracheboud Y, Luquez V, Björkén L, Sjödin A, Tuominen H, Jansson S. The control of autumn senescence in European aspen. Plant physiology. 2009;149(4).
Courtois-Moreau CL, Pesquet E, Sjödin A, Muñiz L, Bollhöner B, Kaneda M, Samuels L, Jansson S, Tuominen H. A unique program for cell death in xylem fibers of Populus stem. The Plant journal : for cell and molecular biology. 2009;58(2).

2008

Sjödin A, Wissel K, Bylesjö M, Trygg J, Jansson S. Global expression profiling in leaves of free-growing aspen. BMC plant biology. 2008;8.
Street NR, Sjödin A, Bylesjö M, Gustafsson P, Trygg J, Jansson S. A cross-species transcriptomics approach to identify genes involved in leaf development. BMC genomics. 2008;9.

2007

Lee H, Bae E-K, Park S-Y, Sjödin A, Lee J-S, Noh E-W, Jansson S. Growth-phase-dependent gene expression profiling of poplar (Populus alba x Populus tremula var. glandulosa) suspension cells. Physiologia plantarum. 2007;131(4).
Druart N, Johansson A, Baba K, Schrader J, Sjödin A, Bhalerao RR, Resman L, Trygg J, Moritz T, Bhalerao R, et al. Environmental and hormonal regulation of the activity-dormancy cycle in the cambial meristem involves stage-specific modulation of transcriptional and metabolic networks. The Plant journal : for cell and molecular biology. 2007;50(4).
Bylesjö M, Eriksson D, Sjödin A, Jansson S, Moritz T, Trygg J. Orthogonal projections to latent structures as a strategy for microarray data normalization. BMC bioinformatics. 2007;8.

2006

García-Lorenzo M, Sjödin A, Jansson S, Funk C. Protease gene families in Populus and Arabidopsis. BMC plant biology. 2006;6.
Druart N, Rodri­guez-Buey M, Barron-Gafford G, Sjödin A, Bhalerao R, Hurry V. Molecular targets of elevated [CO2] in leaves and stems of Populus deltoides: implications for future tree growth and carbon sequestration. Functional Plant Biology [Internet]. 2006;33(2). Available from: http://dx.doi.org/10.1071/FP05139
Bylesjö M, Sjödin A, Eriksson D, Antti H, Moritz T, Jansson S, Trygg J. MASQOT-GUI: spot quality assessment for the two-channel microarray platform. Bioinformatics (Oxford, England). 2006;22(20).
Street NR, Skogström O, Sjödin A, Tucker J, Rodríguez-Acosta M, Nilsson P, Jansson S, Taylor G. The genetics and genomics of the drought response in Populus. The Plant journal : for cell and molecular biology. 2006;48(3).
Klimmek F, Sjödin A, Noutsos C, Leister D, Jansson S. Abundantly and rarely expressed Lhc protein genes exhibit distinct regulation patterns in plants. Plant physiology. 2006;140(3).
Sjödin A, Bylesjö M, Skogström O, Eriksson D, Nilsson P, Rydén P, Jansson S, Karlsson J. UPSC-BASE - Populus transcriptomics online. The Plant journal : for cell and molecular biology. 2006;48(5).

2005

Taylor G, Street NR, Tricker PJ, Sjödin A, Graham L, Skogström O, Calfapietra C, Scarascia-Mugnozza G, Jansson S. The transcriptome of Populus in elevated CO2. The New phytologist. 2005;167(1).
Bylesjö M, Eriksson D, Sjödin A, Sjöström M, Jansson S, Antti H, Trygg J. MASQOT: a method for cDNA microarray spot quality control. BMC bioinformatics. 2005;6.

2004

Andersson A, Keskitalo J, Sjödin A, Bhalerao R, Sterky F, Wissel K, Tandre K, Aspeborg H, Moyle R, Ohmiya Y, et al. A transcriptional timetable of autumn senescence. Genome biology. 2004;5(4).