Cod

Francisella species in Norwegian coastal and fresh waters

We recently published an article reporting the diversity and distribution of Francisella species in Norwegian coastal and fresh waters. In total, samples were obtained from 149 and 64 seawater and freshwater sites. Francisella-related bacteria were identified in approximately 30% of seawater sampled sites, mainly in southern Norway, although a single positive sample was identified in the far north of the country. No PCR positives were identified from the freshwater sources.

Ion torrent chip

Finally some Ion torrrent sequencing

NGS

I have the last years been working with seguences from various generation of Sanger, 454 and Illumina sequence reads. The improvements in read lengths and data amoutns have been dramatic. It is not longer a problem to generate enough sequences, especially for bacterial projects. I am therefore looking forward for the first batch of Ion torrent 316 chip reads that are supposed arrive soon.

SEQwiki selected as semantic wiki of the month

SEQwiki (aka Seqanswers wiki) is selected as the semantic wiki of the month (January 2012). SEQwiki is a wiki database of tools, service providers, and tutorials for analyzing DNA data retrieved through high-throughput sequencing (HTS). It was created and is run by the community at http://seqanswers.com. I encourage you to provide your knowledge to the wiki if you are developer or user of next generation sequencing (NGS) tools.